1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTTGTTGCTCAGATATCAAAGGAAGCCGGTTATCTCACCGTTGGAGTTGTTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtcttctccacccgtatacaattaatgtggcgttacatttgataaatagttttggttaagcatggaacaaacatttccttaggggagctgtgag...
species | Oryza sativa |
transcript | LOC_Os04g56970.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGC--GT ---T-GGAAGCATTAGAGAAGCTGEST: gi|29655620|gb|CB651895.1|CB651895
genomic: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtct ... tccatttcagGCGTTGGAAGCATTAGAGAAGCTG
EST: TTACCTATCCATTCAGTTTTAAAGGACGCAAGCGCTCTCTTCAGGC--GT ---T-GGAAGCATTAGAGAAGCTGGAAAGGAGTGTAGACACACTTATTGTTEST: gi|29655650|gb|CB651925.1|CB651925
genomic: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtct ... tccatttcagGCGTTGGAAGCATTAGAGAAGCTGGAAAGGAGTGTAGACACACTTATTGTT
EST: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGC--GT ---T-GGAAGCATTAGAGAAGCTGGAAAGGAGTGTAGACACACTTATTGTTEST: gi|29655649|gb|CB651924.1|CB651924
genomic: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtct ... tccatttcagGCGTTGGAAGCATTAGAGAAGCTGGAAAGGAGTGTAGACACACTTATTGTT
EST: CTACCTATCCATTCAGTTATGAAGGACGCAAGCGCTCTCTTCAGGC--GT ---T-GGAAGCATTAGAGAAGCTGGAAAGGAGTGTAAACACACTTATTGTT
genomic: TTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtct ... tccatttcagGCGTTGGAAGCATTAGAGAAGCTGGAAAGGAGTGTAGACACACTTATTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTTGCTCAGATATCAAAGGAAGCCGGTTATCTCACCGTTGGAGTTGTTACCTATCCATTCAGTTTTGAAGGACGCAAGCGCTCTCTTCAGGCAAGTgtttgagtcttctccacccgtatacaattaatgtggcgttacatttgataaatagttttggttaagcatggaacaaacatttccttaggggagctgtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggggag