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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGgtattggtttgttctctttccataattcactagatgttgagttttgtgtatagaattgacagaactaccacgtgatattgtttgctgtag

Basic information

species Oryza sativa
transcript LOC_Os04g56450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 3
GTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGgtattggtttgttctctttccataattcactagatgttgagttttgtgtatagaattgacagaact--accacgtgatattgt-ttgctgtag
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GTCATGGTGGTGCTAAGGTAGCAGAGTATGTTAAAGAAAACCTGTTCAACAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGgtatactcttgctctttttcccgctaacatcagttgct----tatgtgaatgcaaccatgagggcttgagcttgtgtgtttgtattactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|701023|gb|D47314.1|D47314
EST:     TCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAG                         ATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTC
genomic: TCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGgtattggttt ... tttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTC