1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAACATGCCTAAAATAAAGACAAGCCGTGTCAAATATCCTGGAGGATGGGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAGgtatgacatatgctcccctttcagatgtttattgatacttctgctcttatatggatactaatatcatctactcatgcag
species | Oryza sativa |
transcript | LOC_Os04g55290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAG CTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCCAAEST: gi|86505376|gb|CI148009.1|CI148009
genomic: GGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAGgtatgacata ... actcatgcagCTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCCAA
EST: AAATGAGGGAAG CTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCCAAEST: gi|29686606|gb|CB682881.1|CB682881
genomic: AAATGAGGGAAGgtatgacata ... actcatgcagCTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCCAA
EST: GGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAG CTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCNCA
genomic: GGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAGgtatgacata ... actcatgcagCTGAAAATGACACGCATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGC-CA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACATGCCTAAAATAAAGACAAGCCGTGTCAAATATCCTGGAGGATGGGAGCTTATTGAACCAACTATCCGTGAGTTGGATGCCAAAATGAGGGAAGgtatgacatatgctcccctttcagatgtttattgatacttctgctcttatatggatactaatatcatctactcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT