1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGCATCCGCTGGTACATTGAGTTGGAGGACGGCTACTTGGTCGAGCAGGAGAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaattcgaatgcacttctcttttttttgtatttatttgatcacaccaagagaacaagatggtactcttttgggttttgagcattcatgtgtgctgtttggtcatcagagtaccatctcatcgtagtgactgagtttattctggtcatttatgttcttggggtactgtacttccag
species | Oryza sativa |
transcript | LOC_Os04g53760.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCCGTAGCTACGATGGATGCAGAGAATGCC-AGCACGCCAAGTTGG AGGCCCAGCTTACCAGTGATCTGGEST: gi|29623653|gb|CB628664.1|CB628664
genomic: AAGCTCCGTAG-TACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGG
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGG AGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACTEST: gi|29635281|gb|CB640290.1|CB640290
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACT
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGG AGGCCCAGCTTANCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACTEST: gi|29637659|gb|CB642668.1|CB642668
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACT
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGG AGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACTEST: gi|88386498|gb|CI575276.1|CI575276
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACT
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCC-AGCACGCCAAGTTGG AGGCGCAGCTTAGCAGTGATCTGGAAGAEST: gi|88385811|gb|CI568479.1|CI568479
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGA
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGG AGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACTEST: gi|88427363|gb|CI569401.1|CI569401
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACT
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGG AGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGATAGCTGCACACCTGAACTEST: gi|88454426|gb|CI569998.1|CI569998
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAAAGCTGCACACCTGAACT
EST: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCACAGCACGCCAAGTTGG AGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAA
genomic: GAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaatt ... gtacttccagAGGCCCAGCTTAGCAGTGATCTGGAAGAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATCCGCTGGTACATTGAGTTGGAGGACGGCTACTTGGTCGAGCAGGAGAAGCTCCGTAGTACGATGGATGCAGAGAATGCCCAGCACGCCAAGTTGGgtaatgaattcgaatgcacttctcttttttttgtatttatttgatcacaccaagagaacaagatggtactcttttgggttttgagcattcatgtgtgctgtttggtcatcagagtaccatctcatcgtagtgactgagtttattctggtcatttatgttcttggggtactgtacttccag
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