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GCCCTCAAAGGAGGAAGCCAAAAAAGTGAAGAAGCAGCCCCCACCGAAGAAGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagttcaatcttcctcaatgtagcttgctgatattctcttaatctgacttctgtttagagtcttagttcaatataggtattgtatatcagatgat...
species | Oryza sativa |
transcript | LOC_Os04g52960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|58692865|gb|CK081552.1|CK081552
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|218494329|gb|FG970076.1|FG970076
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|29633107|gb|CB638116.1|CB638116
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|88349407|gb|CI621517.1|CI621517
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCC-A-CCAAAGAAGACTGTEST: gi|88341180|gb|CI639937.1|CI639937
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGT
EST: AGGTTGAGAGCACCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|58683130|gb|CK071817.1|CK071817
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTEST: gi|88364704|gb|CI612519.1|CI612519
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAATGCCCAACCAAAGAAGACTEST: gi|88358345|gb|CI606854.1|CI606854
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGGACAACCTEST: gi|58662979|gb|CK051665.1|CK051665
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
EST: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAG GTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
genomic: AGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagtt ... ttctttgcagGTAAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTCAAAGGAGGAAGCCAAAAAAGTGAAGAAGCAGCCCCCACCGAAGAAGGTTGAGAGCAGCAGTTCTGAGGAGGATTCTTCAGAATCTGAAGAGGAGgtaactagttcaatcttcctcaatgtagcttgctgatattctcttaatctgacttctgtttagagtcttagttcaatataggtattgtatatcagatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc