1 5' 3' | 2 5' 3' | 3 5' 3' |
TTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcatttgcatgagtagattgcgcatgacactgtttgcagagttggattgtactgactactatgtacgaaatctttctgtgtgcattcttcag
species | Oryza sativa |
transcript | LOC_Os04g51400.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|33675698|gb|CF303937.1|CF303937
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|58691609|gb|CK080296.1|CK080296
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|89196993|gb|CI021833.1|CI021833
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|12622915|gb|AU173128.1|AU173128
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|29666124|gb|CB662399.1|CB662399
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|11173166|gb|AU164645.1|AU164645
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATNACEST: gi|29671277|gb|CB667552.1|CB667552
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|18386506|gb|BM419704.1|BM419704
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|29666123|gb|CB662398.1|CB662398
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|29676637|gb|CB672912.1|CB672912
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|86841641|gb|CI337348.1|CI337348
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTACEST: gi|9865894|gb|AU101644.1|AU101644
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
EST: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAG GAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
genomic: CTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcat ... cattcttcagGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGATGGTCTGCAAACATTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTACTTCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGgcaagttcatttgcatgagtagattgcgcatgacactgtttgcagagttggattgtactgactactatgtacgaaatctttctgtgtgcattcttcag
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