1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaattttctaaacaatatttgcaataacgaccttttctatggcactgtttataaatacatattatctggtaggtgtttcaatattgtgtaatatgtag
species | Oryza sativa |
transcript | LOC_Os04g51310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTACAAGAAAAACAAGTTCAAAAGACATAATCTGAAACCGATACAG GACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGEST: gi|88369215|gb|CI577678.1|CI577678
genomic: GCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaatt ... taatatgtagGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
EST: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAG GACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGEST: gi|29659389|gb|CB655664.1|CB655664
genomic: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaatt ... taatatgtagGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
EST: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAG GACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGEST: gi|29679484|gb|CB675759.1|CB675759
genomic: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaatt ... taatatgtagGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
EST: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAG GACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGEST: gi|29679485|gb|CB675760.1|CB675760
genomic: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaatt ... taatatgtagGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
EST: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAG GACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
genomic: TTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaatt ... taatatgtagGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGgtaaacaattttctaaacaatatttgcaataacgaccttttctatggcactgtttataaatacatattatctggtaggtgtttcaatattgtgtaatatgtag
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