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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcatcgggaacatatttgtgtagaaggcttgtgtgtataggatacattcccaattcccatattcatctaatggtcctatttgttatttccag

Basic information

species Oryza sativa
transcript LOC_Os04g51270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51270.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G094928_T01 (Zea mays), 5'ss of exon 3
AAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcatcgggaac-atatttgtgtagaaggcttgtgtgtataggatacat-tcccaattcccatattcatctaatggtcctatttgttatttccag
 || || || ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |  |  | || |||    |   | ||   |    |    |   | ||    |  | | |                               
CAAGTCAGCGAGGCTCAGGCAAGCAAAAGAGGAGGCTGAGCGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTTCAGAGGAAGGTTGCAGAGgtatgcacgccatgtcccatttttccccactggactacaggacctcacttctgtgtcttggtgactacag------------------------------

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 3
AAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcatcgggaacatatttgtgtagaaggcttgtgtgtataggatacattcccaattcccatattcatctaatggtcctatttgttatttccag---
 || || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||  ||   | |  ||  |  |    |   |  |||||   ||   | |||        || | ||   | | |||  |    ||| |    ||    
TAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacacttgcacaatcctattcctaattccccgtgtgc-cagcggaaattatatccatcccttttgtgccactggctccccatgtcacacgcacaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88976560|gb|CI024681.1|CI024681
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|8858728|gb|AU096046.1|AU096046
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88728180|gb|CI751690.1|CI751690
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|86416976|gb|CI030987.1|CI030987
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|33808450|gb|CF330112.1|CF330112
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88760409|gb|CI769965.1|CI769965
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88379918|gb|CI513508.1|CI513508
EST:     TGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: TGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|33659779|gb|CF282392.1|CF282392
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|700659|gb|D46950.1|D46950
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|86879280|gb|CI327058.1|CI327058
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88738132|gb|CI761640.1|CI761640
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|700675|gb|D46966.1|D46966
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCN
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88512345|gb|CI439851.1|CI439851
EST:     AGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: AGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88581807|gb|CI699017.1|CI699017
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGNG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|2276040|gb|C25017.1|C25017
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATNTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|55438740|gb|CV732668.1|CV732668
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTTTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88361918|gb|CI682092.1|CI682092
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88721963|gb|CI745473.1|CI745473
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88736650|gb|CI760158.1|CI760158
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|55408685|gb|CV721061.1|CV721061
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|11863327|gb|AU066028.2|AU066028
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|30226563|gb|CB964455.1|CB964455
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|15008962|gb|AU223350.1|AU223350
EST:     AGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: AGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|55433931|gb|CV730082.1|CV730082
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|38468888|gb|CF953019.1|CF953019
EST:     CTGAATACCGTGCCCAGATAGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88345939|gb|CI632412.1|CI632412
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88690585|gb|CI734664.1|CI734664
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGAAAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|87004212|gb|CI296754.1|CI296754
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88281074|gb|CI402272.1|CI402272
EST:     GATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: GATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|3767921|gb|AU031948.1|AU031948
EST:     TGAATACCGTGCCCAGATGGAGGCTGAATTTCCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: TGAATACCGTGCCCAGATGGAGGCTGAATTT-CAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|15852864|gb|BI805660.1|BI805660
EST:     CTGAATACCGTGCCCAGATGGA-GCTGAATTTCAGAGGAAGGTTGCAGAG                         ATTACCGGTGACTCTGGTCCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88483402|gb|CI420673.1|CI420673
EST:     GAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: GAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|27547337|gb|CA767335.2|CA767335
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|14192430|gb|AU184641.1|AU184641
EST:     ATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: ATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|58593666|gb|CF991974.1|CF991974
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88765387|gb|CI774481.1|CI774481
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|55438738|gb|CV732667.1|CV732667
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|86503200|gb|CI145833.1|CI145833
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|23514183|gb|BU673507.1|BU673507
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|58694530|gb|CK083217.1|CK083217
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|8857393|gb|AU094711.1|AU094711
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|2280867|gb|C25362.1|C25362
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88982545|gb|CI028010.1|CI028010
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|163923261|gb|EG711070.1|EG711070
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCA
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCA
EST: gi|88288582|gb|CI663371.1|CI663371
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|568132|gb|D38967.1|D38967
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGC
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGC
EST: gi|163925475|gb|EG715368.1|EG715368
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|14192429|gb|AU184640.1|AU184640
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGC
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGC-GGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGC
EST: gi|88688869|gb|CI732445.1|CI732445
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|25806235|gb|CA762196.1|CA762196
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|38470936|gb|CF955067.1|CF955067
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|8528073|gb|AU092888.1|AU092888
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88360665|gb|CI647675.1|CI647675
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|568319|gb|D39163.1|D39163
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|30227559|gb|CB965451.1|CB965451
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|8858718|gb|AU096036.1|AU096036
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|109711760|gb|CI028930.1|CI028930
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|218502328|gb|FG952293.1|FG952293
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|88689212|gb|CI732788.1|CI732788
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
EST: gi|218497695|gb|FG953495.1|FG953495
EST:     CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAG                         AGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG
genomic: CTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 67 (upstream exon), 69 (downstream exon)
Score: 122

AAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcat ... ttatttccagAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCGGAAAAAATCGCACAACTCAAGCAGCAGGCTGCAAGTATCTCCCCTGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAGGCTGAATTTCAGAGGAAGGTTGCAGAGgtatgttcatcgggaacatatttgtgtagaaggcttgtgtgtataggatacattcccaattcccatattcatctaatggtcctatttgttatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA