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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTACTGGCGCCTCCCCGCCAACGCCACGCTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgcatgatcagcgatcttgctctttgatctcgccttttggggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os04g51150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51150.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G125669_T01 (Zea mays), 5'ss of exon 3
CGACTACTGGCGCCTCCCCGCCAACGCCACGCTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgcat--gatcagcgat-cttgctctttgatctcgccttttggggatgtatgttgaattggttctgacgtgtgatctggtctg-gcttgtgatgtgcag
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || | |  ||    | || |  ||   |     |   ||  |   | | |     | |||||||||||  | |||  |||| || |||||||  ||||||
CGACTACTGGCGCCTCCCCGCTAACGCCACGCTCAAGGACGTAGTCACCGTCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatacttccgaattccaataccagcaactctgcttgatctcatctcgttatg----ggattggttctgaaatctgaattggtatgagcttgtgccgtgcag

upper sequence: LOC_Os04g51150.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ27318 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGCCTCCCCGCCAACGCCACGCTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgcatgatcagcgatcttgctctttgatctcgccttttggggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcag
|||||||||| | || ||     |||||| | ||   ||||| |||   || || ||||||||||||||||||||||| ||||| || ||||||||| ||||| || |        ||       | |      |||  |   || |      | |   |                                          
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagcctcggatgcaagaagaagggatgggaattctaacgagtttg---ctcacgcccag-----------------------------------------

upper sequence: LOC_Os04g51150.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ35306 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGCCTCCCCGCCAACGCCACGCTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgcatgatcagcgatcttgctctttgatctcgcct-tttggggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcag
|||||||||| | || ||     |||||| | ||   ||||| |||   || || ||||||||||||||||||||||| ||||| || ||||||||| ||||| || |        |        | |    | |||  |   ||||   | |                                                  
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagcctcggatgcaaaaagaagggatgggagttctaacgagtttgctcacgcgcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86412989|gb|CI067394.1|CI067394
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86414751|gb|CI069154.1|CI069154
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88908185|gb|CI090780.1|CI090780
EST:     CGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: CGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88848252|gb|CI086774.1|CI086774
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|87026992|gb|CI259645.1|CI259645
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86522408|gb|CI162614.1|CI162614
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88976924|gb|CI257620.1|CI257620
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88994380|gb|CI117334.1|CI117334
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86259848|gb|CI065721.1|CI065721
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|89169707|gb|CI110066.1|CI110066
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86412930|gb|CI067335.1|CI067335
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88834097|gb|CI077578.1|CI077578
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88994537|gb|CI117689.1|CI117689
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86413101|gb|CI067506.1|CI067506
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86259489|gb|CI065362.1|CI065362
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|87036668|gb|CI191290.1|CI191290
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88201165|gb|CI201520.1|CI201520
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86427412|gb|CI072509.1|CI072509
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88276934|gb|CI396097.1|CI396097
EST:     ACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: ACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88964669|gb|CI070015.1|CI070015
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88221284|gb|CI221240.1|CI221240
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88834663|gb|CI077946.1|CI077946
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86413072|gb|CI067477.1|CI067477
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88217977|gb|CI217826.1|CI217826
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCAGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|89194692|gb|CI117129.1|CI117129
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86415428|gb|CI069831.1|CI069831
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|89194448|gb|CI116885.1|CI116885
EST:     GTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: GTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88961857|gb|CI097010.1|CI097010
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86600120|gb|CI258460.1|CI258460
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGGCGTCAATCACTTCGCATCG                         GACATCCATTACCCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGG
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACC-AGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGG
EST: gi|88994528|gb|CI117680.1|CI117680
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86601981|gb|CI258657.1|CI258657
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86545116|gb|CI185322.1|CI185322
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|8977569|gb|AU097576.1|AU097576
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCA-TTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88214626|gb|CI214475.1|CI214475
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88283419|gb|CI404865.1|CI404865
EST:     CGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: CGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86258742|gb|CI065095.1|CI065095
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|10930941|gb|AU161215.1|AU161215
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86255252|gb|CI063741.1|CI063741
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|89194635|gb|CI117072.1|CI117072
EST:     CGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: CGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|86418726|gb|CI053527.1|CI053527
EST:     TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: gi|88516704|gb|CI444358.1|CI444358
EST:     TCGTNCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG                         GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 9

CGACTACTGGCGCCTCCCCGCCAACGCCACGCTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGATATCACTGAGGATGTTTGTCTACTGCCGAGGATTTGCATCACTAATAAT




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