1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtactttattcggcaattttttacgcttttaaattgtacattgaattatccagcaatagaactttggtaataatctgtagttcctttcctcaaagcac...
species | Oryza sativa |
transcript | LOC_Os04g48820.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|218500580|gb|FG960548.1|FG960548
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAC-G-TTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|33794900|gb|CF323330.1|CF323330
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|58689823|gb|CK078510.1|CK078510
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|66921923|gb|CX108771.1|CX108771
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|88413444|gb|CI581459.1|CI581459
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGEST: gi|58690259|gb|CK078946.1|CK078946
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
EST: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
genomic: ATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtacttta ... tgtaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGgtgtactttattcggcaattttttacgcttttaaattgtacattgaattatccagcaatagaactttggtaataatctgtagttcctttcctcaaagcac
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