1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACTGTCTACTGCTGATAAGCAGCTAATAGTGTTCACTGATCCTGCTgtgagtaccataaattcctgatgtatcaaaatccatttagcacttgcttttccataaagtacttacgttgccacttaaccttcgttctaatagagctggtaatgttgcag
species | Oryza sativa |
transcript | LOC_Os04g46892.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACTGTCTACCTGCTGATAAGCAGCTAATAGTGTTCACCTGATCCTGCT TTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGACEST: gi|24208909|gb|AU225936.1|AU225936
genomic: CTACTGTCTA-CTGCTGATAAGCAGCTAATAGTGTTCA-CTGATCCTGCTgtgagtacca ... aatgttgcagTTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGAC
EST: TTTTACTGTCTACTGGTGATAAGCAGCTAATAGTGTTCACTGATCCTGCT TTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGACEST: gi|86539962|gb|CI180168.1|CI180168
genomic: TTCTACTGTCTACTGCTGATAAGCAGCTAATAGTGTTCACTGATCCTGCTgtgagtacca ... aatgttgcagTTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGAC
EST: ATAGTGTTCACTGATCCTGCT TTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGAC
genomic: ATAGTGTTCACTGATCCTGCTgtgagtacca ... aatgttgcagTTGAGCTTGAAGGTAGTGGATCAGATGTTACGTCTTGGTTGGGAAGGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACTGTCTACTGCTGATAAGCAGCTAATAGTGTTCACTGATCCTGCTgtgagtaccataaattcctgatgtatcaaaatccatttagcacttgcttttccataaagtacttacgttgccacttaaccttcgttctaatagagctggtaatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT