1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATGGGGAGGATGCTCTTAAGGATGGAATGGGAGGAGGCAGTGACTTCCATAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaacatatgtaccctgaaattttccagcaccctcaacatttttttgtttgaactttttttttaaaaaaaaacagaattattcatgctaacttttatggttaacag
species | Oryza sativa |
transcript | LOC_Os04g46390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|84117330|gb|CD151097.1|CD151097
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACEST: gi|29645124|gb|CB650131.1|CB650131
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTAC
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|33653448|gb|CF276062.1|CF276062
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGGGTGGTGCCTTTNNNN NNNAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATEST: gi|14714017|gb|AU197958.1|AU197958
genomic: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGG-TGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGG-AGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCAT
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|13807441|gb|AU181957.1|AU181957
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29643291|gb|CB648298.1|CB648298
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29614042|gb|CB619055.1|CB619055
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGTGCATAEST: gi|29643236|gb|CB648243.1|CB648243
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|33654740|gb|CF277354.1|CF277354
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGGGTGGTGCCTTTNNNN NNNAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATEST: gi|29678572|gb|CB674847.1|CB674847
genomic: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGG-TGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGG-AGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCAT
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|4715680|gb|AU056796.1|AU056796
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCNAAGAGTACGCAGACAGAGACGTGGTGAAGEST: gi|29657304|gb|CB653579.1|CB653579
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTC-AAGAGTACGCAGACAGAGACGTGGTGAAG
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|33657288|gb|CF279902.1|CF279902
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|218494200|gb|FG946885.1|FG946885
genomic: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGG-TGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTEST: gi|58593485|gb|CF991793.1|CF991793
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGT
EST: AAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCACAGAGTACGCAGACAGAGACGTGGTGAAEST: gi|33657059|gb|CF279673.1|CF279673
genomic: AA-TCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCA-AGAGTACGCAGACAGAGACGTGGTGAA
EST: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29678521|gb|CB674796.1|CB674796
genomic: AATCCATTTGACATATTTGAGCAGTTTTTCGGGGG-TGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29680639|gb|CB676914.1|CB676914
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|33694058|gb|CF322297.1|CF322297
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29663531|gb|CB659806.1|CB659806
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|29639999|gb|CB645008.1|CB645008
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATAEST: gi|88316124|gb|CI620402.1|CI620402
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAEST: gi|29668764|gb|CB665039.1|CB665039
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAA
EST: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGG GGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
genomic: TAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaaca ... tggttaacagGGAGTAGCTCAAGAGTACGCAGACAGAGACGTGGTGAAGATGTGGCGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGGGAGGATGCTCTTAAGGATGGAATGGGAGGAGGCAGTGACTTCCATAATCCATTTGACATATTTGAGCAGTTTTTCGGGGGTGGTGCCTTTGGGGgtaagcaacatatgtaccctgaaattttccagcaccctcaacatttttttgtttgaactttttttttaaaaaaaaacagaattattcatgctaacttttatggttaacag
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