1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGTTGCTCTTGCAAGGGTGGAAACTGAGAAGAGGAACTCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttactgacttttatacaccagtatgcattttttcccatgtgatcaacatgaagaacgaactgacatcaatgtcgcag
species | Oryza sativa |
transcript | LOC_Os04g45070.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|38471757|gb|CF955888.1|CF955888
genomic: AGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|58585685|gb|CF983993.1|CF983993
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88975844|gb|CI024095.1|CI024095
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|50878545|gb|AF527706.1|AF527706
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88968318|gb|CI098560.1|CI098560
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|87010775|gb|CI312467.1|CI312467
genomic: TGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCANAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|87026567|gb|CI252521.1|CI252521
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|58693172|gb|CK081859.1|CK081859
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|29684469|gb|CB680744.1|CB680744
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|89167373|gb|CI252904.1|CI252904
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|29670320|gb|CB666595.1|CB666595
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|38470437|gb|CF954568.1|CF954568
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|58603482|gb|CK014010.1|CK014010
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGA-AAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|38471661|gb|CF955792.1|CF955792
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88445327|gb|CI587221.1|CI587221
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGA-AAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|86478310|gb|CI120943.1|CI120943
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|86528486|gb|CI168692.1|CI168692
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: GAGAAGACAAAAGCTGAGCACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|89189973|gb|CI013540.1|CI013540
genomic: GAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: GGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|86256047|gb|CI007763.1|CI007763
genomic: GGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: ATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCGGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|29670321|gb|CB666596.1|CB666596
genomic: ATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACCCAAAGAAAGCEST: gi|313084059|gb|HO213842.1|HO213842
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|89165064|gb|CI255121.1|CI255121
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|58696071|gb|CK084758.1|CK084758
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCAAAGCATGGGAGGAAAATGAGAAGACCAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88216477|gb|CI216326.1|CI216326
genomic: TCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: AAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88992545|gb|CI035633.1|CI035633
genomic: AAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACCAAGAAAGCEST: gi|38470061|gb|CF954192.1|CF954192
genomic: TGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: CAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88367239|gb|CI564003.1|CI564003
genomic: CAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|58601478|gb|CK012006.1|CK012006
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|88839566|gb|CI005354.1|CI005354
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: GAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCEST: gi|163923100|gb|EG712799.1|EG712799
genomic: GAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
EST: TCATTGATCAGAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAA GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
genomic: TCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttact ... aatgtcgcagGGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTGCTCTTGCAAGGGTGGAAACTGAGAAGAGGAACTCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttactgacttttatacaccagtatgcattttttcccatgtgatcaacatgaagaacgaactgacatcaatgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA