1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTGCAGATCTACAGACAAGGAACTGgtacagtagacccgcgaaactgtcaccttttagcatttctctgtttcatttctcttgtccagctgtggtaactggaccaaatgctttgcacag
species | Oryza sativa |
transcript | LOC_Os04g45010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGEST: gi|88415936|gb|CI594048.1|CI594048
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
EST: GTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCC-AAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGEST: gi|88414771|gb|CI604129.1|CI604129
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
EST: GTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGEST: gi|88441198|gb|CI602220.1|CI602220
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
EST: GTTGGAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGEST: gi|88370488|gb|CI590066.1|CI590066
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
EST: GTTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGEST: gi|88294792|gb|CI604664.1|CI604664
genomic: GTT-GCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
EST: GTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGEST: gi|88370129|gb|CI585134.1|CI585134
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTG
EST: GTTGCAGATCTACAGACAAGGAACTG GCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
genomic: GTTGCAGATCTACAGACAAGGAACTGgtacagtaga ... ctttgcacagGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAGATCTACAGACAAGGAACTGgtacagtagacccgcgaaactgtcaccttttagcatttctctgtttcatttctcttgtccagctgtggtaactggaccaaatgctttgcacag
- GCAGAT
- - - - - - - - AAGGAA