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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGCGATCATAGCAATGTCACTTCAACATGAAGATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcaccttgctgttcatctttactttctccatatccacagcgtgcctgtgtgaatgagggtcgggtctcatagttgttgctccattcgtcagtag...

Basic information

species Oryza sativa
transcript LOC_Os04g43220.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g43220.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G016487_T01 (Zea mays), 5'ss of exon 3
ATTGATGCGATCATAGCAATGTCACTTCAACATGAAGATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcaccttgctgttcatctttactttctccatatccacagcgtgcctgtgtgaatgagggtcgggtctc-ata-gttgttgctccattcg-tcagtag
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ATTGATGCAATTGTAGCAATGTCACTTCAACATGAAGAAGATACTCATCGGACATCTAGGACCTTAAGGAGGTTCCAAAACCATACTgtgagagcac--tgaaatcattttatgttttgcatgtgtgagctagtgaccagtaggtattctagtcttgctactatacactgtcattttacaagatctgaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642643|gb|CB647650.1|CB647650
EST:     ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA                         AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: gi|29667534|gb|CB663809.1|CB663809
EST:     ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA                         AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: gi|29674337|gb|CB670612.1|CB670612
EST:     ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA                         AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT