1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttctaaaagctgggtttttgacatcttggcatattgctgctgtatttagatatttctacttcttttaaacatatctagccactgaatttgaat...
species | Oryza sativa |
transcript | LOC_Os04g40874.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|29663317|gb|CB659592.1|CB659592
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCC-TCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88313812|gb|CI597443.1|CI597443
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88449978|gb|CI572109.1|CI572109
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|58654814|gb|CK043494.1|CK043494
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88719764|gb|CI743274.1|CI743274
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88421660|gb|CI616985.1|CI616985
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGEST: gi|58611861|gb|CK039573.1|CK039573
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTG
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88388045|gb|CI590321.1|CI590321
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88305522|gb|CI630684.1|CI630684
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGAEST: gi|88407965|gb|CI588994.1|CI588994
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGA
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88430411|gb|CI567430.1|CI567430
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACC-CAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88403389|gb|CI573112.1|CI573112
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATATEST: gi|88409948|gb|CI571205.1|CI571205
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|29634314|gb|CB639323.1|CB639323
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|29614696|gb|CB619709.1|CB619709
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88396043|gb|CI595591.1|CI595591
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATAC-TCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGGAACATEST: gi|88421686|gb|CI569067.1|CI569067
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: ATGCGAGATCAAACCCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|58608815|gb|CK036848.1|CK036848
genomic: ATGCGAGATCAAACC-TTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: ATGCGAGATCAAACCTTTCTGATGATGGGTTGAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88300652|gb|CI587456.1|CI587456
genomic: ATGCGAGATCAAACCTTTCTGATGATGGGTT-AAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATATEST: gi|58670061|gb|CK058747.1|CK058747
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|29680803|gb|CB677078.1|CB677078
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|29635386|gb|CB640395.1|CB640395
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|88363865|gb|CI607175.1|CI607175
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAAAATEST: gi|163920079|gb|EG712021.1|EG712021
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATEST: gi|117243651|gb|CT843162.1|CT843162
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
EST: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
genomic: TATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttc ... attgctacagATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGGgtatggtttctaaaagctgggtttttgacatcttggcatattgctgctgtatttagatatttctacttcttttaaacatatctagccactgaatttgaat
- - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - AGATCA