1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAAACAACATTCGCTATTACATCCTCCCTGATAGCTTAAATCTGGAAACTTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaagttcccctacccatctagttttgagtttgatcgatacaagaactatcaattgacctaccaatcttcgtttgtaaccag
species | Oryza sativa |
transcript | LOC_Os04g39444.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|38478446|gb|CF962579.1|CF962579
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|88478017|gb|CI415288.1|CI415288
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTANTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|25807609|gb|CA763570.1|CA763570
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|12622181|gb|AU172394.1|AU172394
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|86529917|gb|CI170123.1|CI170123
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|86530707|gb|CI170913.1|CI170913
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|88212938|gb|CI210789.1|CI210789
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|86416050|gb|CI030061.1|CI030061
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|66922077|gb|CX108925.1|CX108925
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|55414803|gb|CV727179.1|CV727179
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCCEST: gi|55436206|gb|CV731241.1|CV731241
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
EST: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAG GGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
genomic: TTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa ... ttgtaaccagGGAAACCTTTGGGGCGTGGGCGCGGACGCGGTCGTGGCCGTGGTCGGGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAACAACATTCGCTATTACATCCTCCCTGATAGCTTAAATCTGGAAACTTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaagttcccctacccatctagttttgagtttgatcgatacaagaactatcaattgacctaccaatcttcgtttgtaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG