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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTTGGAAATGCACAACTGTCAGGTGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCTgtaagtttacacttccagtctttggagaattatgtttttagttacaccatgcagtagcgtatctattcaagttgtcataatatactgcattgaagcttgg...

Basic information

species Oryza sativa
transcript LOC_Os04g38480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 3
TGATCTTGGAAATGCACAACTGTCAGGTGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCTgtaagtttacacttccagtctttggagaattatgtttttagttacaccatgcagtagcg-tatctattcaagttgtcataat-atactgcattgaagcttgg
||||||||||||||||||||| |||||| ||||||| || ||||||||||| ||||||||| |||||||||||||||||| ||| ||||   ||| || || |  | |  ||||| ||  |||  |||  | | | | ||  | |    ||| | ||   ||||    ||||  
TGATCTTGGAAATGCACAACTATCAGGTCCATTGGTGCCACAGCTTGGGCAATTGAAAAATATGCAATATCTgtaagtttccacatccatgattttgataactgagctaatagtttcatgatgacgtatagctgtatctttcaatcccaatattgatttagcatgattgctt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44670533|gb|CR283967.1|CR283967
EST:     TCAGGGGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCT                         GGAGCTTTACAGCAACAACATAAGTGGGACAATACCTAATGAACTGGGAAA
genomic: TCAGGTGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCTgtaagtttac ... ctaattacagGGAGCTTTACAGCAACAACATAAGTGGGACAATACCTAATGAACTGGGAAA
EST: gi|58588679|gb|CF986987.1|CF986987
EST:     TCAGGGGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCT                         GGAGCTTTACAGCAACAACATAAGTGGGACAATACCTAATGAACTGGGAAA
genomic: TCAGGTGCATTGGTTCCCCAGCTTGGGCAGTTGAAAAATCTGCAATATCTgtaagtttac ... ctaattacagGGAGCTTTACAGCAACAACATAAGTGGGACAATACCTAATGAACTGGGAAA