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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgcatgcccgttttgcatacgtgattacctttggataattgcacatccagtaatctgatttttctaccctgttctgataatag

Basic information

species Oryza sativa
transcript LOC_Os04g37460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G101069_T01 (Zea mays), 5'ss of exon 5
GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgca-------tgcccgttttgcatacgtgattacctt--tggataattgcacatccagtaatctgatttttctaccctgttctgataatag---------------------------------
||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |        |  | ||| | | |   ||||    ||  | |   |||  |  |||| | | |  |    | |||  ||   | ||  |                                   
GTCATCTGGAGGAGCAAGGAGGACCTCCCCGACGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCCACCTTCACGCTCAACTTCTCCAAAGgtacggtaactctagctgttgttcctgtctgatggatttgttcgcagattatatttccactgagcaaacaaat-tacagtgacttcatcttctctgccttccttctctcttttggacgacatacag

upper sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S8_163V6.1 (Physcomitrella patens), 5'ss of exon 4
GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgcatgcccgttttgcatacgtgattacctttggataattgcacatccagtaatctgatttttctaccctgttctgataatag-------------------------------------------------------------------------------------------------------------------
||  | ||||||| |||||||||||| ||||| ||| | || || ||| |||||||| | || ||||| ||||| |||||||| ||||||||||| ||||||     |   | |||  ||   || | |    |  |||    |  ||   ||| ||    || ||    |  |      || |                                                                                                                   
GTTGTGTGGCGCAGCAAGGAGGACCTTCCCGAGGAGTTGATTTTTCACGTCAACTACTTGGGAGCCGATCAGCCCACCTTCACCCTCAACTTCTCTAAAGgtttgcactgctcttgt-taaacgacttcaccagagtaaactgatctcttctaacctacggttactcttttcctgcagccatcgtctagaacagagcattcagcagcctcgagaacctcctgcgtgagggaaatgttgacagattggcgaggtcatcactacatctcactgtactaacgaccgttgtcttgtgagtcag

upper sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ36644 (Selaginella moellendorffii), 5'ss of exon 5
GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgcatgcccgttttgcatacgtgattacctttggataattgcacatccagtaatctgatttttctaccctgttctgataatag
|| |||||| |   |||||| || || || || |||||| ||||||||||||| || || || |||||||||||||| ||||| ||||| || ||||||||| |        ||||  |       | | ||||    ||  | |    |  | |||   | || ||||               
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGGGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttc--------tttgagtg------ttcttttgttctatcactctcttaccattct--ctcttttaccacag-----------

upper sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 5
GTCATCTGGCGCAACAAGGAGGACCTCCCCGATGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCAACCTTCACGCTCAACTTCTCCAAAGgtgcatgcccgttttgcatacgtgattacctttggataattgcacatccagtaatctgatttttctaccctgttctgataatag
|| |||||| |   |||||| || || || || |||||| ||||||||||||| || || || |||||||||||||| ||||| ||||| || ||||||||| |        ||||  |       | | ||||    ||  | |    |  | ||||  | || ||||               
GTTATCTGGAGAGGCAAGGAAGATCTTCCGGAAGAGCTCGTCTTCCACATCAATTATCTTGGAGCCGACCAGCCAACTTTCACTCTCAATTTTTCCAAAGgttc--------tttgagtg------ttcttttgttctatcactctcttatcattctg--tcttttaccacag-----------