1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAATGGAAACTTAGAGCAATGGCTCCATGGTGATGTTGGTCCCGTAAGCCCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGGgtatgcatctttcagttcattaccgtagactatagacatattggtaacattatttacattgtgcag
species | Oryza sativa |
transcript | LOC_Os04g35080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCA-ATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGG CTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGTEST: gi|58657777|gb|CK046457.1|CK046457
genomic: CTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGGgtatgcatct ... cattgtgcagCTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGT
EST: CCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAGGG CTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGTEST: gi|33381394|gb|CF196737.1|CF196737
genomic: CCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGGgtatgcatct ... cattgtgcagCTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGT
EST: CCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGG CTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGT
genomic: CCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGGgtatgcatct ... cattgtgcagCTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATGGAAACTTAGAGCAATGGCTCCATGGTGATGTTGGTCCCGTAAGCCCTCTCACATGGGATATGAGAATGAAGATTATACTAGGAACAGCAAAAGGgtatgcatctttcagttcattaccgtagactatagacatattggtaacattatttacattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA