Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCAACAGAAAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCCCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGgtatttgatgcacagaaaaagcattagcatttaatgaattatcatttgttttgaggaaacatgtaataccagatttttgttctttccctaaaaataaatactatttgctccag

Basic information

species Oryza sativa
transcript LOC_Os04g02050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g02050.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G158147_T01 (Zea mays), 5'ss of exon 3
CCATCCAACAGAAAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCCCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGgtatttgatgcacagaaaaagcattagcatttaatgaattatcatttgttttgaggaaacatgtaat-accagatttttgttctttccctaaaaataaatactatttgctccag
 ||||||||||||||||||||  |||||||||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||| |||| |     ||||  ||| | |   ||| || | |   ||||     |  | | | |||  || |   | |      | |      | | ||          
ACATCCAACAGAAAAGAGGGACTTGTACAACCCAGATCACGGGAAGAAGGTCCTGAGCATGGCTCCTGGTTTAGAGAAACTCAACATACTGCCCTTCAAGgtatttgattcacata-----catttccatgtgac--attgtcctattcattgaaatgtccagcagtcaccgcatgtggatgcacattttgagcggtcacagtaccc-------

upper sequence: LOC_Os04g02050.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA13G06940.1 (Glycine max), 5'ss of exon 3
CCATCCAACAGAAAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCCCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGgtatttgatgcacagaaaaagcattagcatttaatgaattatcatttgttttgaggaaacatgtaataccagatttttgttctttccctaaaaataaat-actatttgctccag
||| ||||| || || |||||| ||||  |||| ||||||||||||||||| ||||||||||| || ||| | ||||| || ||||| ||||| |||| ||||  |  |        ||   ||  || ||   |   |  || | |||      || | ||||  |  ||      || | | | ||| | |||   | |||   |  |    
CCACCCAACTGAGAAAAGGGATTTGTATGACCCTGATCATGGAAAGAAGGTGCTTAGCATGGCTCCCGGTCTGGAGAAGCTTAACATTTTGCCATTCAGGgtaagtagtattactttaacatat-ggctttaggttcttgctcctctgt------gagatatgttctttcaa-----tgctatcttcctcacaatgttttactgcatattgt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796395|gb|CF324064.1|CF324064
EST:     TCCTTAGCATGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAG                         GTAGCAGCATATGATACAGTGGCGAAGAAGATGGCCTTCTTTGATCCTTCA
genomic: TCCTTAGCATGGCCCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGgtatttgatg ... tttgctccagGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCGTTCTTTGATCCTTCA