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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCTGCAGCTTTACGGGTGCGTACTGGACAGATTATGGTTCCAGCGGCAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcatgcatgcattcattcattgtcgcttgaatggataaaggagttctgtgagcttaacttccacctttgaactgttttttctatatgttgataa...

Basic information

species Oryza sativa
transcript LOC_Os03g64400.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689870|gb|CK078557.1|CK078557
EST:     CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG                         GTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
EST: gi|58669849|gb|CK058535.1|CK058535
EST:     CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG                         GTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
EST: gi|58611882|gb|CK039594.1|CK039594
EST:     CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG                         GTGATTGAACCTGATGCCCAAGCTGGTGACTGATGTACCCGACGAGAATAC
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC