1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACTCATCCCACTTTTGCCACTTCTGTAAAGAAGTCCATTGGTGCGAAGAAGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAGgtaacactgtggatcattagcgctatgtatgcatgtgtttggttccttcccacagttaatatttaatatacctcctctcttctatctatatgatgtgaacattaaggactgacctttgcctttatgttgcag
species | Oryza sativa |
transcript | LOC_Os03g63710.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAG CCAAGTGAAAGCCTGTATGATCAGAAACCTGAAGAGCCAAAACCTGCTGCCEST: gi|29679055|gb|CB675330.1|CB675330
genomic: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAGgtaacactgt ... tatgttgcagCCAAGTGAAAGCCTGTATGATCAGAAACCTGAAGAGCCAAAACCTGCTGCC
EST: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAG CCAAGTGAAAGCCTGTATGATCAGAAACCTGAAGAAGC-AAAACCTGCTGCEST: gi|58670961|gb|CK059647.1|CK059647
genomic: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAGgtaacactgt ... tatgttgcagCCAAGTGAAAGCCTGTATGATCAGAAACCTGAAGA-GCCAAAACCTGCTGC
EST: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAG CCAAAGTGAAAGCCTGTATGATCAGAAACCTGAA
genomic: AGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAGgtaacactgt ... tatgttgcagCCAA-GTGAAAGCCTGTATGATCAGAAACCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCATCCCACTTTTGCCACTTCTGTAAAGAAGTCCATTGGTGCGAAGAAGATTGGAGGCAAGACTGGAGGGCTTGGTGTTAAAAAGCTCACCACAAAGgtaacactgtggatcattagcgctatgtatgcatgtgtttggttccttcccacagttaatatttaatatacctcctctcttctatctatatgatgtgaacattaaggactgacctttgcctttatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA