1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCAGACATGGACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtag
species | Oryza sativa |
transcript | LOC_Os03g63430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|88350957|gb|CI620617.1|CI620617
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACAGGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCEST: gi|33803131|gb|CF327436.1|CF327436
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|88453223|gb|CI565665.1|CI565665
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ANACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGEST: gi|58681663|gb|CK070350.1|CK070350
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAG
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58685186|gb|CK073873.1|CK073873
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|33812345|gb|CF332062.1|CF332062
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|88265103|gb|CI368877.1|CI368877
genomic: ATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29664482|gb|CB660757.1|CB660757
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58658268|gb|CK046948.1|CK046948
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAEST: gi|88210956|gb|CI212596.1|CI212596
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAA
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGCGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58694542|gb|CK083229.1|CK083229
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|88351878|gb|CI624683.1|CI624683
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACAAACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGEST: gi|58681237|gb|CK069924.1|CK069924
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAG
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|33656126|gb|CF278740.1|CF278740
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCEST: gi|29645307|gb|CB650314.1|CB650314
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|33795887|gb|CF323811.1|CF323811
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58666529|gb|CK055215.1|CK055215
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29658196|gb|CB654471.1|CB654471
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29664785|gb|CB661060.1|CB661060
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58607299|gb|CK035332.1|CK035332
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58659555|gb|CK048235.1|CK048235
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58593588|gb|CF991896.1|CF991896
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29639941|gb|CB644950.1|CB644950
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58679603|gb|CK068290.1|CK068290
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29678374|gb|CB674649.1|CB674649
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|58678571|gb|CK067258.1|CK067258
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|86495227|gb|CI137860.1|CI137860
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|29637544|gb|CB642553.1|CB642553
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|117217926|gb|CT845200.1|CT845200
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|88454338|gb|CI569910.1|CI569910
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|86534283|gb|CI174489.1|CI174489
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCEST: gi|86894782|gb|CI310174.1|CI310174
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGAEST: gi|88390672|gb|CI609297.1|CI609297
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGA
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGAEST: gi|19388435|gb|BM929262.1|BM929262
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGA
EST: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCAGACATGGACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA