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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcagctcttggcatagtacatatggttacttggatcttttcatgttaattcagttgccttctgctccttatatctactaacctataaaggaacg...

Basic information

species Oryza sativa
transcript LOC_Os03g63020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G045241_T01 (Zea mays), 5'ss of exon 4
GTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag---ctcttggcatagtacatatggttacttggatcttttcatgttaattcagttgccttctgctccttatatctactaacctataa-aggaacg
||||||| ||||| || ||||||| ||||| ||||||||||||||||||| ||||| |||    ||||| ||||||||||||||||||    |||      |   |||| | |||  |   |   |    |||  |  || | | ||     |  |  ||    || |  |  |  |  | | 
GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaagaactcaccaattgaaacattttgttcttccaagaat---gtgtgtacccaatcgtctatgcatgatgttacaggctcaatttcagcaatagc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58694135|gb|CK082822.1|CK082822
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|58656490|gb|CK045170.1|CK045170
EST:     GAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|88324687|gb|CI587656.1|CI587656
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29628840|gb|CB633851.1|CB633851
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|58692426|gb|CK081113.1|CK081113
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29644978|gb|CB649985.1|CB649985
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|117226423|gb|CT848659.1|CT848659
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29633012|gb|CB638021.1|CB638021
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29613394|gb|CB618407.1|CB618407
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29656191|gb|CB652466.1|CB652466
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29613119|gb|CB618132.1|CB618132
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
EST: gi|29663526|gb|CB659801.1|CB659801
EST:     GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT                         GTTGCAGTTNNNNNNNTGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT
genomic: GCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag ... tactgtgcagGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATT