1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtttcacattaccgattagcatgttatagtggtcatcattagctctttgctataaattctggaaaaccatcaattgaatgaataggtctaaga...
species | Oryza sativa |
transcript | LOC_Os03g61050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGEST: gi|88395082|gb|CI609398.1|CI609398
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATG
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGEST: gi|88423838|gb|CI609869.1|CI609869
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAG
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTT-ACCAGTCAAEST: gi|58672499|gb|CK061185.1|CK061185
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAA
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTAATATEST: gi|13447553|gb|AU181047.1|AU181047
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTA-TAT
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGEST: gi|7378442|gb|AU088713.1|AU088713
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATG
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGEST: gi|5607636|gb|AU076308.1|AU076308
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATG
EST: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAG GATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATG
genomic: TGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtt ... ttgattccagGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGgtgtgtggtttcacattaccgattagcatgttatagtggtcatcattagctctttgctataaattctggaaaaccatcaattgaatgaataggtctaaga
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG