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21 5' 3' |
AGCTGGAGATGTTCTTCAGGGAGGAGACCCGTCGTGGCAGCTGCTCCGTTGTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaatgcaccccttgtcaggcataaacagctgttaactttgtgtaattatgtgctgttagctctgttttacttgctctgtgaggtttctggagc...
species | Oryza sativa |
transcript | LOC_Os03g58700.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|88585635|gb|CI703290.1|CI703290
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|58660347|gb|CK049027.1|CK049027
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|88425407|gb|CI567127.1|CI567127
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGGCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGEST: gi|29634546|gb|CB639555.1|CB639555
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTG
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|88339082|gb|CI677904.1|CI677904
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|29627956|gb|CB632967.1|CB632967
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|33675182|gb|CF303421.1|CF303421
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|58662129|gb|CK050809.1|CK050809
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|88369738|gb|CI680407.1|CI680407
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|29634961|gb|CB639970.1|CB639970
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCCEST: gi|87008988|gb|CI304931.1|CI304931
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGGCTCC
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTEST: gi|88719457|gb|CI742967.1|CI742967
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCT
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAEST: gi|88314794|gb|CI608253.1|CI608253
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTA
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAGEST: gi|88388322|gb|CI627861.1|CI627861
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCTGTGTACATTAAATCAAAAGAG
EST: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACT CTATCTCCTCTGCACAGTAGGATCT
genomic: GTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaa ... catgtcctagCTATCTCCTCTGCACAGTAGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGAGATGTTCTTCAGGGAGGAGACCCGTCGTGGCAGCTGCTCCGTTGTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaatgcaccccttgtcaggcataaacagctgttaactttgtgtaattatgtgctgttagctctgttttacttgctctgtgaggtttctggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacccc