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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTTTGATCTTTGAATATGTCAACAATACTGATTTCAAAGTACTCTACCCAACACTATTGGATTACGATATCAGATACTACATTTACGAATTATTAAAGgtaataatctgaattgcagaatcctatgtctgtaataatcaatgtttttatttatgctatcttgtctatggaacatttctttgtactgatggtattttga...

Basic information

species Oryza sativa
transcript LOC_Os03g55490.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g55490.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 4
TAGTTTGATCTTTGAATATGTCAACAATACTGATTTCAAAGTACTCTACCCAACACTATTGGATTACGATATCAGATACTACATTTACGAATTATTAAAGgtaa-taatctgaattgcagaatcctatgtctgtaataatcaatgtttt-tatttatgctatcttgtctatggaacatttctttgtactgatggtattttga--
 ||  | || ||||| ||||| |||||||||||||||||||| |||||||| || ||    || |  |||||| ||||||||||| | ||  |  | ||||| | |  || |  ||      ||| | |  ||   |  |   | || |  |   |    ||  ||  |  | | | | | |         ||   ||| ||  
CAGCCTAATTTTTGAGTATGTGAACAATACTGATTTCAAAGTGCTCTACCCCACTCTTACAGACTTTGATATCCGATACTACATTCATGAGCTGCTCAAGgtgagtggtcagtcttttt---tccgaggcttgatctgcttggttttgtacagaaacatgatgctgattgcg-accgtgtatcgcccaaagtgacgtttagacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678682|gb|CK067369.1|CK067369
EST:     TCAGATACTACATTTATGAATTATTAAAG                         GTGTGTCTGTAGGCACTAGATTATTGTCATTCACGAGGCATCATGCATCGA
genomic: TCAGATACTACATTTACGAATTATTAAAGgtaataatct ... acttatccagGTGTGTCTGTAGGCACTAGATTATTGTCATTCACGAGGCATCATGCATCGA