1 5' 3' | 2 5' 3' | 3 5' 3' |
GACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGAATCTGTCACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaacaatccttttgcaaatggtcactgaagctttggcagtttcctataatcctgcgtgtgatatgagaatgcataaatttgtatgaattttct...
species | Oryza sativa |
transcript | LOC_Os03g53310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACCEST: gi|58599544|gb|CK010072.1|CK010072
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: GTGAAGCTCGTCACCGACACA CAAAT-AGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACCEST: gi|88207441|gb|CI207290.1|CI207290
genomic: GTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACCEST: gi|186893005|gb|FG124690.1|FG124690
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: CACTGCTGAGCAAAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTAEST: gi|58655955|gb|CK044635.1|CK044635
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTA
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACCEST: gi|88973139|gb|CI717668.1|CI717668
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACCEST: gi|88669486|gb|CI723404.1|CI723404
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGACTACCEST: gi|58671392|gb|CK060078.1|CK060078
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACACAATAGCGGAGTACC
EST: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACA CAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACAC
genomic: CACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaa ... ataaatccagCAAATGAGAGCACAAGAAGGCGTGTCATGTTCTACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGAATCTGTCACTGCTGAGCAGAAATACCTTAAAGCCCGTGAAGCTCGTCACCGACACAgtaagcttaacaatccttttgcaaatggtcactgaagctttggcagtttcctataatcctgcgtgtgatatgagaatgcataaatttgtatgaattttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC