1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCACCCAACTGAAAAGAGGGACCTGTATGATGCTGATCATGGGAAAAAGGTGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatcctaccagaccagatatcacattttttggatgcactagattgtgtagttcgctagcttactgtccatcttgtacatttgaatttggatgtcaagcaacatattttagttttcagataaaccttgttgtattctttttcttggcatgactcctgatttgttttatcag
species | Oryza sativa |
transcript | LOC_Os03g53230.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACCAAGCCAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|29681905|gb|CB678180.1|CB678180
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|86851846|gb|CI316415.1|CI316415
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|55409116|gb|CV721492.1|CV721492
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|3761173|gb|C98421.1|C98421
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88850953|gb|CI096343.1|CI096343
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: CTCAATATTCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|29614774|gb|CB619787.1|CB619787
genomic: CTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|11173164|gb|AU164644.1|AU164644
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88222150|gb|CI222106.1|CI222106
genomic: TTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|33794987|gb|CF323373.1|CF323373
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGNGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAEST: gi|88230991|gb|CI230840.1|CI230840
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCTAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|27577783|gb|CB000478.1|CB000478
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88957043|gb|CI095087.1|CI095087
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGTATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|89174813|gb|CI111011.1|CI111011
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|29656058|gb|CB652333.1|CB652333
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|66924054|gb|CX110902.1|CX110902
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGATGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTACTTTCAAG GTGGCTGCATATGACACAAAACAAAAGAAAATGGACTTTTTCGATEST: gi|33812718|gb|CF332246.1|CF332246
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGAT
EST: TGTTGAGCATGGCTCCTGNGCTTGAGAAGCTCAATATCCTTCCTTTCAAG G-GTCTGCATATGACACAAAGCAAAAGAAAATGGACTTTCTCGATCCATCAEST: gi|86864580|gb|CI344171.1|CI344171
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: GGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88985711|gb|CI016420.1|CI016420
genomic: GGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|112786244|gb|EE592353.1|EE592353
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|29662144|gb|CB658419.1|CB658419
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88259721|gb|CI364014.1|CI364014
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATTGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|86501359|gb|CI143992.1|CI143992
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCAEST: gi|88833263|gb|CI076746.1|CI076746
genomic: TGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
EST: TGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
genomic: TGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatc ... gttttatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGACTTTTTCGATCCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCCAACTGAAAAGAGGGACCTGTATGATGCTGATCATGGGAAAAAGGTGTTGAGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGgtatgtcatcctaccagaccagatatcacattttttggatgcactagattgtgtagttcgctagcttactgtccatcttgtacatttgaatttggatgtcaagcaacatattttagttttcagataaaccttgttgtattctttttcttggcatgactcctgatttgttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA