Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagcaaccaccaaaaaaaaagtgcgtggattgttcagtgtttggtccaccgacgcattgctgaattgtggcaatctgtttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g52840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 3
TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccag-----caaccaccaaaaaaaaagtgcgtggattgttcagt-------gtttggtccaccgacgcattgctgaattgtggca--atctgtttggtgcag-------------------------------------------
||| | |||||| |||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||  |        ||  || |       |  | |||    | ||||||         ||   |   |   |  ||| || ||| |   |  || |||||  | |                                             
TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgtttcttcagtcatcttttccta--tacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA14G36280.2 (Glycine max), 5'ss of exon 3
TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaa---ccagcaaccaccaaaaaaaaagtgcgtggatt---gttcagtgtttggtccaccgacgcattgctgaattgt-------ggcaatctgtttggtgcag---------
|||   |||||||| ||||  || || ||||   | |||||||||||||||||||| ||||| | ||| ||||| || ||||||||||| |   | ||   |   | | |      ||| | | ||    || |    |  |    ||||     |||   |||||       || | | |||||| | | |         
TGGATAAAGCAGCTCAACGATCCTCTCGAGGCCATCGATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttg-tacggaatttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88424301|gb|CI581856.1|CI581856
EST:     ATCCCGAGATCGCCAACATCATCGAGCACGACAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58612638|gb|CK040350.1|CK040350
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29675547|gb|CB671822.1|CB671822
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88403169|gb|CI570910.1|CI570910
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88424270|gb|CI581825.1|CI581825
EST:     ATCCCGAGATCGCCAACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29615988|gb|CB621000.1|CB621000
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGACAGAGAACTTCACCTCGGTGTCAGAGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29624282|gb|CB629293.1|CB629293
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58592438|gb|CF990746.1|CF990746
EST:     ATCGCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58612303|gb|CK040015.1|CK040015
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29614138|gb|CB619151.1|CB619151
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29636379|gb|CB641388.1|CB641388
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29619822|gb|CB624834.1|CB624834
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|33381238|gb|CF196581.1|CF196581
EST:     AGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: AGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29638078|gb|CB643087.1|CB643087
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88344989|gb|CI625835.1|CI625835
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58610782|gb|CK038494.1|CK038494
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58610008|gb|CK038041.1|CK038041
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29624606|gb|CB629617.1|CB629617
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAC                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|4714813|gb|AU055930.1|AU055930
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29621132|gb|CB626143.1|CB626143
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29641599|gb|CB646606.1|CB646606
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58609425|gb|CK037458.1|CK037458
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88426571|gb|CI579400.1|CI579400
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58613274|gb|CK040986.1|CK040986
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|117244508|gb|CT848411.1|CT848411
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29614628|gb|CB619641.1|CB619641
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29670801|gb|CB667076.1|CB667076
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58665373|gb|CK054059.1|CK054059
EST:     ATCCCGAGATCGGCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29646105|gb|CB651112.1|CB651112
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58657072|gb|CK045752.1|CK045752
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88428580|gb|CI565048.1|CI565048
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29618931|gb|CB623943.1|CB623943
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29618036|gb|CB623048.1|CB623048
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29667991|gb|CB664266.1|CB664266
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29633899|gb|CB638908.1|CB638908
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29634685|gb|CB639694.1|CB639694
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCC
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCC
EST: gi|29615274|gb|CB620286.1|CB620286
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88734102|gb|CI757610.1|CI757610
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29635394|gb|CB640403.1|CB640403
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29634586|gb|CB639595.1|CB639595
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29646445|gb|CB651452.1|CB651452
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58611875|gb|CK039587.1|CK039587
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58605862|gb|CK033895.1|CK033895
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29621678|gb|CB626689.1|CB626689
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58605171|gb|CK033204.1|CK033204
EST:     ATCCCGAGATCGCCGACATCATCGAGGGCGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88447579|gb|CI584583.1|CI584583
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29634602|gb|CB639611.1|CB639611
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29678030|gb|CB674305.1|CB674305
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58695121|gb|CK083808.1|CK083808
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|33674867|gb|CF303106.1|CF303106
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTTATCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88406273|gb|CI596400.1|CI596400
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29622694|gb|CB627705.1|CB627705
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58613051|gb|CK040763.1|CK040763
EST:     ATCCCGAGATCGGCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88397959|gb|CI583277.1|CI583277
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29665918|gb|CB662193.1|CB662193
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|38471328|gb|CF955459.1|CF955459
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58654507|gb|CK043187.1|CK043187
EST:     ATCCCGAGATCGCGGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29630142|gb|CB635151.1|CB635151
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88826721|gb|CI777286.1|CI777286
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58606494|gb|CK034527.1|CK034527
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29613481|gb|CB618494.1|CB618494
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88745591|gb|CI768951.1|CI768951
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|87023586|gb|CI286337.1|CI286337
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCAACTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58673445|gb|CK062131.1|CK062131
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88760569|gb|CI770125.1|CI770125
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88733450|gb|CI756627.1|CI756627
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|4714773|gb|AU055890.1|AU055890
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|88398541|gb|CI595942.1|CI595942
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|86901078|gb|CI306267.1|CI306267
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|58605751|gb|CK033784.1|CK033784
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAC
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29634567|gb|CB639576.1|CB639576
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
EST: gi|29687893|gb|CB684168.1|CB684168
EST:     ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG
genomic: ATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagca ... tttggtgcagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtaaccagcaaccaccaaaaaaaaagtgcgtggattgttcagtgtttggtccaccgacgcattgctgaattgtggcaatctgtttggtgcag

- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG