1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCATAATGAGGCATCATCTCTCCTTGAATTCTGTACATCCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtctatcttattctgttgttattttctgtaaataatattcatgtttttcgtatgaatgctggcaaactaacttgtttcttactgttgtttgcag
species | Oryza sativa |
transcript | LOC_Os03g51900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATT AAAGTTGCATTGTCTGGCCCCCCTAATATACTTGTTACAACTCCTGCTTGTEST: gi|58659948|gb|CK048628.1|CK048628
genomic: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtc ... ttgtttgcagAAAGTTGCATTGTCTGGCCCCCCTAATATACTTGTTACAACTCCTGCTTGT
EST: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATT AAAGTTGCATTGTCTGGCCCCCCTAATATCCTTGTTACAACTCCTGCTTGTEST: gi|33676604|gb|CF304843.1|CF304843
genomic: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtc ... ttgtttgcagAAAGTTGCATTGTCTGGCCCCCCTAATATACTTGTTACAACTCCTGCTTGT
EST: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATT AAAGTTGCATTGTCTGGCCCCCCTAATATACTTGTTACAACTCCTGCTTGT
genomic: CCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtc ... ttgtttgcagAAAGTTGCATTGTCTGGCCCCCCTAATATACTTGTTACAACTCCTGCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATAATGAGGCATCATCTCTCCTTGAATTCTGTACATCCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtctatcttattctgttgttattttctgtaaataatattcatgtttttcgtatgaatgctggcaaactaacttgtttcttactgttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - TTGAAG