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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcactggcactgccgctgctgctacacctttttaccatacgcgacaacgtgcatggtggcgcatggctaacggtggatggatgggtggatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g51740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G054361_T01 (Zea mays), 5'ss of exon 2
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcactggcactgccgctgctgctacacctttttaccatacgcgacaacgtgcat--ggtggcgcatggctaacggtggatggatgggtggatgcag--------
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |     |   ||||        |  || |  |   |   ||| |  || ||||   ||   ||      |  ||| ||   |  |  ||| ||  |        
TCGTGCTCACCGCCGGAGCCACCTCGGCCAACGAGGCCCTCATGTTCTGCCTCGCCGACCACGGAGACGCCTTTCTCATCCCCACGCCATACTACCCAGGgtatgtgtgtgtgttgcc-------ttgtacttactcgtcgc-cgcaagtacttgcagtagggaacgtgcaagtggcggcggggcggcgtctgggtgtcgccgcgatg

upper sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G23020.1 (Glycine max), 5'ss of exon 2
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcactg---gcactgcc--gctgctgctac-acctttttaccatacgcgacaacgtgcatggtggcgcatggctaacggtggatggatgggtggatgcag---------
|||| ||||| |||||||||||||| || |||||  |  | |||||||| ||||| || || ||||| || |||||| ||||||| || || |||||||||| || | |     || ||      |  |   || |||||  |   | | |  | |  ||   |  || |   |   | |           |||||  ||| |          
TCGTTCTCACTGCCGGCGCCACCTCCGCAAACGAAACCTTAATGTTCTGTCTCGCTGAACAAGGCGAAGCATTCCTCCTCCCCACTCCTTATTACCCAGGgtgcgtaatatttacattgtttaaattttatcactaccttggtgaaacaagttatagtgtattttatgtccattcattcattcctctgacttgggtttatgaactttttgcag

upper sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA17G16990.1 (Glycine max), 5'ss of exon 2
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcactggcactgccgctgctgctacacctttttaccatacgcg-acaacgtgcatggtggcgcatggctaacggtggatggatgggtggatgcag
|||| |||||||||||||||||||| || |||||  |  | |||||||| |||||||| || ||||| || |||||| ||||||| || || ||||||||||  | | | |             |  |||  |  |     ||     |  |  |  ||       |   |     |||  ||| |    | | |||||
TCGTTCTCACCGCCGGCGCCACCTCCGCAAACGAAACCTTAATGTTCTGTCTCGCCGAACAAGGCGAAGCATTCCTCCTCCCCACTCCTTATTACCCAGGgtgagtattcgtttctatttataagaaacaaatcatagtgttaaatatattatttaaattacattcccctgaccttggtttatgaacaacttg-tgcag

upper sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv00s1437g00010.t01 (Vitis vinifera), 5'ss of exon 3
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcac--tggcactgccgct----gctgctaca---cctttttaccatacgcgacaacgtgcatggtggcgcatggctaacggtggatggatg-ggtggatgcag
| || ||||| || || || || || || |||||| | |||||||||||||| ||  |||  ||||| || || ||| | |||||||||||||||||||||||   ||  ||  | | | | |     |||||| |   |||||    | |      |     |||||        | | |||| |    |   || | |   |||||
TAGTCCTCACTGCTGGGGCAACGTCCGCCAACGAGACACTCATGTTCTGCCTTGCTAACCCAGGCGAAGCTTTTCTCCTTCCCACCCCATACTACCCAGGgtaattaccttgctatttctgtttgcaactgctataaagcctttaagtcgtttattgctttacgcatga---aatgtagttaactgattttttttgcgattcttgcag

upper sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 3
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcac--tggcactgccgct----gctgctaca---cctttttaccatacgcgacaacgtgcatggtg-gcgcatggctaacggtggatggatgggtggatgcag
| || ||||| || || || || || || |||||| | |||||||||||||| ||  |||  ||||| || || ||| | |||||||||||||||||||||||   ||  ||  | | | | |     |||||| |   |||||      |      |     |||||    |    |  || ||  |   |     | |   |||||
TAGTCCTCACTGCTGGGGCAACGTCCGCCAACGAGACACTCATGTTCTGCCTTGCTAACCCAGGCGAAGCTTTTCTCCTTCCCACCCCATACTACCCAGGgtaattaccttgctatttctgtttgcaactgctataaagcctttaagttgtttattgctttacgcatgaaatgtagttaactgacttttttttttgcgattcttgcag