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TGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTGATGATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaacttgtaacatttttttccttgtaatcttgcctttgtttatcttcgtactggtacatcataatgtataccatgtttaaactgagtacctgtga...
species | Oryza sativa |
transcript | LOC_Os03g50850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|58663710|gb|CK052396.1|CK052396
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|58654216|gb|CK042896.1|CK042896
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|2427752|gb|C72215.1|C72215
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|117216922|gb|CT845265.1|CT845265
genomic: ACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|29625134|gb|CB630145.1|CB630145
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|29675682|gb|CB671957.1|CB671957
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|58655319|gb|CK043999.1|CK043999
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|58669047|gb|CK057733.1|CK057733
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATAEST: gi|88363383|gb|CI643241.1|CI643241
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
EST: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAG GAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
genomic: ATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaact ... aatttaatagGAAGCTTTTGGCCGATACCTGGACTTGCATGAGCTTTACAATGAGTTCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTGATGATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTGGAGAGgtatttaacttgtaacatttttttccttgtaatcttgcctttgtttatcttcgtactggtacatcataatgtataccatgtttaaactgagtacctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA