1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgttttaacattgagtcttttaattttatttcccttttctttccaggctacttaagttattaactgacccttctggtaaattatttgcaatgtg...
species | Oryza sativa |
transcript | LOC_Os03g50620.2 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTAEST: gi|58659859|gb|CK048539.1|CK048539
genomic: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
EST: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTAEST: gi|426369|gb|D22232.1|D22232
genomic: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
EST: CTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
genomic: CTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgttttaacattgagtcttttaattttatttcccttttctttccaggctacttaagttattaactgacccttctggtaaattatttgcaatgtg
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA