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GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatgattgattaggcctcatggttcttgtgcaattttgtgatccttattgtcaattttgttatatatttgcagttgcttctacggatttccctt...
species | Oryza sativa |
transcript | LOC_Os03g50480.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTTGC-GCTAATGGAGTAAGACGTGTTTGGGTTGGEST: gi|58675297|gb|CK063984.1|CK063984
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCT-GCCGCTAATGGAGTAAGACGTGTTTGGGTTGG
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|29664693|gb|CB660968.1|CB660968
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|58654844|gb|CK043524.1|CK043524
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTAGGAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|87015499|gb|CI303105.1|CI303105
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|58590938|gb|CF989246.1|CF989246
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCGCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|58667790|gb|CK056476.1|CK056476
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTG-TGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGAEST: gi|58666319|gb|CK055005.1|CK055005
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
EST: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG ATCATTACAAAAATGGCTGTCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
genomic: CCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatg ... cttggtatagATCATTACAAAAATGGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAGgtaatttatgattgattaggcctcatggttcttgtgcaattttgtgatccttattgtcaattttgttatatatttgcagttgcttctacggatttccctt
- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT