1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCAATCGCCGCGCTTACAGAGGATAGAAAGAAGATGCTTACTCCCACAATTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtctagttgattgatgtaaaaatataatgcatcatgtcaatgatgatatttttgtatacatggcatgttgaagttttctgcatgttggtaacttgatattggttgttttgccag
species | Oryza sativa |
transcript | LOC_Os03g49730.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAG GCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAAEST: gi|58669228|gb|CK057914.1|CK057914
genomic: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtcta ... gttttgccagGCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAA
EST: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAG GCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAAEST: gi|2428360|gb|C72823.1|C72823
genomic: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtcta ... gttttgccagGCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAA
EST: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAN GCTATNCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGEST: gi|66922964|gb|CX109812.1|CX109812
genomic: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtcta ... gttttgccagGCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAG
EST: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAG GCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGC
genomic: TTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtcta ... gttttgccagGCTATTCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATCGCCGCGCTTACAGAGGATAGAAAGAAGATGCTTACTCCCACAATTCGTTTGATGGTGCGGCTTGTACTTAGAAGAAAACTGCAGGATGACAAGgtattgtctagttgattgatgtaaaaatataatgcatcatgtcaatgatgatatttttgtatacatggcatgttgaagttttctgcatgttggtaacttgatattggttgttttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG