1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtag
species | Oryza sativa |
transcript | LOC_Os03g47770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|8859712|gb|AU097030.1|AU097030
genomic: AGCATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|568905|gb|D39754.1|D39754
genomic: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATEST: gi|33813694|gb|CF332734.1|CF332734
genomic: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAAT
EST: ATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|87034301|gb|CI188925.1|CI188925
genomic: ATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: ACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|86432724|gb|CI086335.1|CI086335
genomic: ACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: GAGCATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|88206195|gb|CI206044.1|CI206044
genomic: GAGCATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: CCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGEST: gi|11565148|gb|AU165784.1|AU165784
genomic: CCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
EST: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAG GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
genomic: ACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttc ... ttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG