1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGGGAGCTGAGCGTGAGCATTTGGAGGCTGTCATTGGCTCAGCGGTGAACGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCGgtttgttgtttgcaccacatgaaagaaccattttctcgatcctgattgttgatgatcatgtaacattgtttgttgattgcag
species | Oryza sativa |
transcript | LOC_Os03g43510.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCG CATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGAEST: gi|88330475|gb|CI633688.1|CI633688
genomic: CGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCGgtttgttgtt ... ttgattgcagCATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGA
EST: CGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCG CATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGAEST: gi|88330590|gb|CI635215.1|CI635215
genomic: CGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCGgtttgttgtt ... ttgattgcagCATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGA
EST: GTCAGGACACCCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCG CATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGA
genomic: GTCAGGACACC-TGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCGgtttgttgtt ... ttgattgcagCATTGAGAGGTGCCGCCACATTGAAAGCAAGGGCTTTGAAGGAGGTGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGAGCTGAGCGTGAGCATTTGGAGGCTGTCATTGGCTCAGCGGTGAACGTCAGGACACCTGGAGACATTGTTACTGTCACGGCTGCTGCTGCTACCGgtttgttgtttgcaccacatgaaagaaccattttctcgatcctgattgttgatgatcatgtaacattgtttgttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT