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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGgtaaggttttccatatttttctagacattatatttctttctctttctcatatatcatacaatacatacattggatccttgaggttatattctctgtcttg...

Basic information

species Oryza sativa
transcript LOC_Os03g42900.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42900.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G417223_T01 (Zea mays), 5'ss of exon 4
CTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGgtaaggttttccatatttttcta----gacattatatttctttctctttctcatatatcatacaatacatacattggatccttgaggttatattctctgtcttg
|| ||||| ||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || |||||||||||||| || ||||| ||||||||||||||| |||  ||| ||| | ||    |  | | |     ||  ||| | | |   ||    ||  | |         |   ||| |||||| | | | |    
CTTCTAGTGCCATCTTCGCAAGCTGGCAGCCTTATTGGCAAGCAGGGAGCAACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttgtcatgtttctttatttagttactgtggaatttagtctgtttaactgattgaccatgaaacttgagaagtaaatgatgttatagttttttt----

upper sequence: LOC_Os03g42900.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA19G34470.1 (Glycine max), 5'ss of exon 3
CTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGg-taaggttttccatatttttctagacattatatttctttctcttt-ctcatatatcatacaatacatacattgg-atccttgaggttatattctctgtcttg---
      ||  | | | | ||||| || ||| | |||||||| |||||| ||||||| |||||||||||||||   ||    | || | | ||| || |||| | ||||||      |  |  |  | ||||| |||   | |  || ||  | |     || |   ||  ||    || |||    | |  || |       |   
------GTGGCGGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACTATACGTGTTCTTGGATCAGgtttggtcactgctgttgtatattatttttgggtattgttgcttgtgttggcaaccaattatcaataaatattcttttaatcacttttttctggaggtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58586006|gb|CF984314.1|CF984314
EST:     AACCATT-AATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGGTG                         AGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG
genomic: AACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGgtaaggtttt ... ttcttttcagAGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG