1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAGCCTTCATTGGTGCTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctccttagtgctagactgctagtgcttgaagtacatgattccagtgtagtaaatttttacatgtggcaatatttatgttcag
species | Oryza sativa |
transcript | LOC_Os03g42220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATG GACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAATEST: gi|29676853|gb|CB673128.1|CB673128
genomic: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctcct ... ttatgttcagGACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
EST: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATG GACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAATEST: gi|29657046|gb|CB653321.1|CB653321
genomic: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctcct ... ttatgttcagGACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
EST: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATG GACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAATEST: gi|29616345|gb|CB621357.1|CB621357
genomic: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctcct ... ttatgttcagGACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
EST: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATG GACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAATEST: gi|88422879|gb|CI615179.1|CI615179
genomic: CTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctcct ... ttatgttcagGACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
EST: GTCAAGACTACATTGGGACCTAAAGGAATG GACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
genomic: GTCAAGACTACATTGGGACCTAAAGGAATGgtatgctcct ... ttatgttcagGACAAGATCTTGCAATCAACAGGCAGAGGGAGGAGTGTTACTGTTACAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCCTTCATTGGTGCTATGGCTATTGCAGATTTGGTCAAGACTACATTGGGACCTAAAGGAATGgtatgctccttagtgctagactgctagtgcttgaagtacatgattccagtgtagtaaatttttacatgtggcaatatttatgttcag
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA