1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGGCCCCAGGTCCAGGATATAGTTGCGGATTAGCGCAAGAAGTGAAACCTCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATGgtaagtcatttcagtgttttttgtctttctggcgtcacaattatgacaccctttcttcctttttttgcag
species | Oryza sativa |
transcript | LOC_Os03g30260.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATG TGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTCEST: gi|58681522|gb|CK070209.1|CK070209
genomic: TCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATGgtaagtcatt ... ttttttgcagTGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTC
EST: TCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATG TGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTCEST: gi|58681123|gb|CK069810.1|CK069810
genomic: TCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATGgtaagtcatt ... ttttttgcagTGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTC
EST: TCCTACTA-GTTCATTTCACTGGATTGCAGAAGAACAACTCAAGCTCATG TGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTC
genomic: TCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATGgtaagtcatt ... ttttttgcagTGACTTGGAATGTGACATGCACATATTCGCAGTTTGTTGCTCAAAGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGCCCCAGGTCCAGGATATAGTTGCGGATTAGCGCAAGAAGTGAAACCTCCTACTAGGTTCATTTCACTGGATGGCAGAAGAACAACTCAAGCTCATGgtaagtcatttcagtgttttttgtctttctggcgtcacaattatgacaccctttcttcctttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA