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TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagcagcagagcacactgttcaagattgatctttttttctgaaacctcatgttgttccgacctgcaacggtgaatcatgagagaactgcatgtatgcag
species | Oryza sativa |
transcript | LOC_Os03g21230.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGGAGTTCTAGCTGCTGACATAAGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCEST: gi|88431457|gb|CI579574.1|CI579574
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATC
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAEST: gi|29672175|gb|CB668450.1|CB668450
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATA
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGGEST: gi|88407222|gb|CI581309.1|CI581309
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGG
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGGEST: gi|117246958|gb|CT843762.1|CT843762
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGG
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGGEST: gi|29674514|gb|CB670789.1|CB670789
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGG
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGGEST: gi|88452866|gb|CI574413.1|CI574413
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGG
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAAEST: gi|88430841|gb|CI571831.1|CI571831
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAA
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGCGGCGTGCEST: gi|58655495|gb|CK044175.1|CK044175
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGC
EST: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT GGACATGTCATTTAATAAGGATCTTGGAGGCGTGCTCACTCCAAACATCGG
genomic: AAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagca ... atgtatgcagGGACATGTCATTTAATAAGGATCTTGGCGGCGTGCTCACTCCAAACATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCTgtatgtagcagcagagcacactgttcaagattgatctttttttctgaaacctcatgttgttccgacctgcaacggtgaatcatgagagaactgcatgtatgcag
- - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT