1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AAGGGACGCTGGTTCATATCAGGGATCCCCTGTTTACAATGTGAACTCGATGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaaattgagtagttagcatccaattttatccacattgtttgggcattgtttatctttatctggtatttttggtcacagtatcataatttgtgtatgccatcttattgcag
species | Oryza sativa |
transcript | LOC_Os03g18080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAA AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTEST: gi|88298501|gb|CI563496.1|CI563496
genomic: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaa ... cttattgcagAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAA AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTEST: gi|117222519|gb|CT845898.1|CT845898
genomic: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaa ... cttattgcagAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAA AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTEST: gi|29624693|gb|CB629704.1|CB629704
genomic: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaa ... cttattgcagAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAA AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATTGCAGAAACTACTEST: gi|86883987|gb|CI309935.1|CI309935
genomic: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaa ... cttattgcagAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAA AAAAGGGATGAGGCATAT
genomic: TGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaa ... cttattgcagAAAAGGGATGAGGCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGACGCTGGTTCATATCAGGGATCCCCTGTTTACAATGTGAACTCGATGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAACTGCACAAGAAgtatgacaaaattgagtagttagcatccaattttatccacattgtttgggcattgtttatctttatctggtatttttggtcacagtatcataatttgtgtatgccatcttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC