1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATGTTGTGATGGAGTACTGCAAGTTTGGAGAACTGTTTGATTACATTGTTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgaccttactcatttctttcacttgttaaacacgctcttttagcatttacttccaactttaatgcttgcttattttcaccattcaaaacctatgg...
species | Oryza sativa |
transcript | LOC_Os03g17980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58679972|gb|CK068659.1|CK068659
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|33797130|gb|CF324430.1|CF324430
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATTATCTGGGGTTGAATACTGCCACAGAAACATGGGGTGGTTCATCGTEST: gi|33678911|gb|CF307150.1|CF307150
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTAT-ATCTGGGGTTGAATACTGCCACAGAAACATGG--TGGTTCATCGT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|88250467|gb|CI348697.1|CI348697
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29614995|gb|CB620008.1|CB620008
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|33381730|gb|CF197073.1|CF197073
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|218488644|gb|FG955529.1|FG955529
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTTGTGATGGAGTACTGCAAGTTTGGAGAACTGTTTGATTACATTGTTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgaccttactcatttctttcacttgttaaacacgctcttttagcatttacttccaactttaatgcttgcttattttcaccattcaaaacctatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG