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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcatttttgttcggcttgcttgtctattggggggtttgtggcattgacttgtgccggtcggtgaggtca...

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 2
GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcattt--ttgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-
|| |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |    || | |  |    |||| ||||||  ||| | |  ||||  |   || |||  ||| |   | ||  | ||   ||  |  ||   || ||  
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcg---ccccggacgagatcccgtatcatttcgttgcttgttttgcggg---atcgggctgttgggccgaatccattttgatggtgtccgtctagatcta

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 3
GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcatttt--tgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-
|| |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||   |       | |  |    |||| ||||||   || | |  ||||  |   || |||  ||| |     ||  | ||   ||  || ||   || ||  
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcg---ctgcggacgagatcccgtatcatttcgctgcttgttttgcggg---atcgggatgttgggccaaatccattttgatggtggccgtgtagatctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88851974|gb|CI679532.1|CI679532
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58677155|gb|CK065842.1|CK065842
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|33658124|gb|CF280738.1|CF280738
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     TGGTCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88763168|gb|CI772724.1|CI772724
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88406887|gb|CI578415.1|CI578415
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88729590|gb|CI751393.1|CI751393
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAATCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58662662|gb|CK051348.1|CK051348
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     GTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: GTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58668375|gb|CK057061.1|CK057061
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|86888864|gb|CI307922.1|CI307922
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58664972|gb|CK053658.1|CK053658
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88388345|gb|CI627884.1|CI627884
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|428184|gb|D24332.1|D24332
EST:     GACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAG-NAACNTTTTTCACTGGTTCAAAAGACAACCTGAAGAA
genomic: GACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAAC-TTTTTCACTGGTTCAAAAGACAACCTGAAGAA
EST: gi|88725549|gb|CI748808.1|CI748808
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88827428|gb|CI777993.1|CI777993
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88372446|gb|CI610769.1|CI610769
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58654932|gb|CK043612.1|CK043612
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCGTGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|86898701|gb|CI292465.1|CI292465
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88370196|gb|CI585201.1|CI585201
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88730834|gb|CI754447.1|CI754447
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58661516|gb|CK050196.1|CK050196
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|14192538|gb|AU184749.1|AU184749
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCATGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88407211|gb|CI581298.1|CI581298
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88692084|gb|CI735659.1|CI735659
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|33676960|gb|CF305199.1|CF305199
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|163923610|gb|EG715331.1|EG715331
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88382988|gb|CI683086.1|CI683086
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58660955|gb|CK049635.1|CK049635
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     AACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: AACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58661053|gb|CK049733.1|CK049733
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGA
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGA
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58590704|gb|CF989012.1|CF989012
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88351656|gb|CI617381.1|CI617381
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58595983|gb|CK006511.1|CK006511
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58666725|gb|CK055411.1|CK055411
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88410819|gb|CI578625.1|CI578625
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88294549|gb|CI584675.1|CI584675
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88350787|gb|CI619045.1|CI619045
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     TCATCGGCGCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|88371205|gb|CI597682.1|CI597682
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcatttttgttcggcttgcttgtctattggggggtttgtggcattgacttgtgccggtcggtgaggtca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC