1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCTGGAAGAGATTCAAAGGCAACGAGACCGCTCCTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatcactggagcgttctctatcttccctgaatttttgcttacacgcaacttgctacaaattattcgtctgcag
species | Oryza sativa |
transcript | LOC_Os03g16900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAACATCTGGGTGTCAACAAGGAGTACAATGTTGACATGGTTCCCAAG TTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTGEST: gi|2428398|gb|C72861.1|C72861
genomic: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatc ... tcgtctgcagTTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTG
EST: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAG TTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTTTNEST: gi|88391356|gb|CI598174.1|CI598174
genomic: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatc ... tcgtctgcagTTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTG
EST: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAG TTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACAEST: gi|88405323|gb|CI586144.1|CI586144
genomic: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatc ... tcgtctgcagTTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACA
EST: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAG TTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTG
genomic: CTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatc ... tcgtctgcagTTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGGAAGAGATTCAAAGGCAACGAGACCGCTCCTGAACATCTGGGTGTCAGCAAGGAGTACAATGTTGACATGGTTCCCAAGgtccgtcatcactggagcgttctctatcttccctgaatttttgcttacacgcaacttgctacaaattattcgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG