1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTCTGATGGGATATTTCTCAACTGGCGTGAACAAGATGTGGATCCTTGCAATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaaaataaaccctacataaatattgtgaaatgcttagaatttcaacctggctattattttgcttcagtaatatggttttcgtttttaagatggcattttctaataggaagggaatgataacttcatagcttccattgttataaatatatctgaccaccaatatcttttgtttag
species | Oryza sativa |
transcript | LOC_Os03g16010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58666565|gb|CK055251.1|CK055251
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|29629426|gb|CB634435.1|CB634435
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58669498|gb|CK058184.1|CK058184
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58652532|gb|CK041212.1|CK041212
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTEST: gi|58607723|gb|CK035756.1|CK035756
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGT
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCTTATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58672896|gb|CK061582.1|CK061582
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|29629423|gb|CB634432.1|CB634432
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58653189|gb|CK041869.1|CK041869
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58669348|gb|CK058034.1|CK058034
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|58655196|gb|CK043876.1|CK043876
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAGEST: gi|33796848|gb|CF324289.1|CF324289
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
EST: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCT GATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
genomic: AATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaa ... ttttgtttagGATTCTTGCATATCACAAGTTAGTTGGGCCCATACCTCCAGAAATTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGATGGGATATTTCTCAACTGGCGTGAACAAGATGTGGATCCTTGCAATTGGAAGGGTGTTGGATGTGACTCTCACACCAAGAGAGTAGTTTGTCTgtaagaccaaaataaaccctacataaatattgtgaaatgcttagaatttcaacctggctattattttgcttcagtaatatggttttcgtttttaagatggcattttctaataggaagggaatgataacttcatagcttccattgttataaatatatctgaccaccaatatcttttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA