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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAGgtgcttattcttcagtgtcatttcctttatctcattatgggctattttatttgattgcctgggaggaggattatcatagaatcaacctatactttggatt...

Basic information

species Oryza sativa
transcript LOC_Os03g15780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g15780.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G161337_T01 (Zea mays), 5'ss of exon 3
GAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAGgtgcttattcttcagtgtcatttcctttatctcattatgggctattttatttgattgcctggga---ggaggattatcatagaatca-acctatactttgg-att---
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GAAGCTACCGTTCTCCAGTGCTCCTCAGGACGATAGGAACCTTCCTGATGTGCACTTGGGACTCTATGATGATGTTCTAGTCTTCGATAATGTTGAGAAGgtacta----ttcaaga--atttctgtt--ctcgttcgtaactaactcatgatgttctctgtgtttcagagtattgtcctacagttgcagttatgattaagtattaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88360057|gb|CI610171.1|CI610171
EST:     TTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAG                         AAAGTATATGTCATCCATTGGGTAAATCTTGATCGGCATGCAACCACCGAG
genomic: TTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAGgtgcttattc ... tttgctgcagAAAGTATATGTCATCCATTGGGTAAATCTTGATCGGCATGCAACCACCGAG
EST: gi|88394676|gb|CI622550.1|CI622550
EST:     TTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAG                         AAAGTATATGTCATCCATTGGGTAAATCTTGATCGGCATGCAACCACCGAG
genomic: TTCACCTTGGGCTTTATGATGATGTTCTCGTCTTCGACAATGTCGAGAAGgtgcttattc ... tttgctgcagAAAGTATATGTCATCCATTGGGTAAATCTTGATCGGCATGCAACCACCGAG