Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttcccatcaaccccatatttagtactttagtggatatgtttgtagttgtagcagaggaaaatttgtaccaattagtcaatttgtatgactttatg...

Basic information

species Oryza sativa
transcript LOC_Os03g13970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G165926_T01 (Zea mays), 5'ss of exon 3
CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttcccatcaaccccata--------tttagtactttagtggatatgtttgtagttgtagcagaggaaaatttgtaccaattagtcaatttgt---atgactttatg--------------------------------------------------------
|||||||||||||| ||||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||| || || |||| | |||| |        |||| || | |  ||      ||| |     |       |  | |  || | || |  | ||| |||   || | ||  |                                                         
CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaacattttctttactattgtgctgagagaatttttgccaattagtttagggattcagtgc-aactgcttaatctgtcgcataagttgttagatcatggtacttgtagtttgcttaaccaagtaatgcacaacaatgtactatatag

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 3
CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttcccatcaaccccatatttagtactttagtggatatgtttgt--agttgtagcag--ag---gaaaatttgtaccaattagtcaatttgtatgactttatg----------------------------------------------------------
||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||| || || |||| | |||| | |   | ||||| |   | || | |   | ||    ||   ||       |||     ||  |  | ||  ||| | |     ||                                                          
CCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTCCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaatctttgctttactat-tgtgctgggcgaatttcgccaattagtttagggattcagtgcagctgcttaagctgtctcataagttgttagatcatggtacttgtagtttcctgaccagttggtgcacaacaatgtgctgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351142|gb|CI623364.1|CI623364
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCAAG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88314956|gb|CI610015.1|CI610015
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88763078|gb|CI772634.1|CI772634
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|163919850|gb|EG710352.1|EG710352
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|33657883|gb|CF280497.1|CF280497
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|33654150|gb|CF276764.1|CF276764
EST:     GCTCGTCACTCCCACCAGCGAC-T-GGCAAGATCCTCGCTTGT-TG-ACG                         G-CTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88721373|gb|CI744672.1|CI744672
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88445093|gb|CI589571.1|CI589571
EST:     CTCGTCACTCCCACCAGCGACCCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGGAGCAATTCAGGTTGCTC
genomic: CTCGTCACTCCCACCAGCGACC-TCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88390322|gb|CI605775.1|CI605775
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88391146|gb|CI595400.1|CI595400
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88745425|gb|CI768785.1|CI768785
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|58663975|gb|CK052661.1|CK052661
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|33679625|gb|CF307864.1|CF307864
EST:     GCTCGT-ACTCCCACCAGCGACCTCG-CAAGATCCTCGCTTG-ATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCA-CAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88358175|gb|CI605100.1|CI605100
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88354858|gb|CI614136.1|CI614136
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCCAATTCAGGTTGCT
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGC-AATTCAGGTTGCT
EST: gi|88357310|gb|CI622159.1|CI622159
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88826558|gb|CI777123.1|CI777123
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTG
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTG
EST: gi|33681541|gb|CF309780.1|CF309780
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88434013|gb|CI586891.1|CI586891
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88390341|gb|CI607377.1|CI607377
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88414977|gb|CI601809.1|CI601809
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCCCG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88346731|gb|CI657282.1|CI657282
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88736526|gb|CI760034.1|CI760034
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88723553|gb|CI747063.1|CI747063
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTC
EST: gi|88735528|gb|CI759036.1|CI759036
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|33654616|gb|CF277230.1|CF277230
EST:     GCTCGTCACTCCCACCA-CGACCTCGGCAAGATCCT-GCTTGT-TGC-CG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|2309803|gb|C25958.1|C25958
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88362712|gb|CI608861.1|CI608861
EST:     CTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACCG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCT
genomic: CTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCAC-Ggtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCT
EST: gi|88354146|gb|CI637712.1|CI637712
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|33681744|gb|CF309983.1|CF309983
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88425160|gb|CI564677.1|CI564677
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88356912|gb|CI620800.1|CI620800
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATC-TCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88742964|gb|CI766472.1|CI766472
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88360077|gb|CI610191.1|CI610191
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88742045|gb|CI765553.1|CI765553
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88718520|gb|CI742030.1|CI742030
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88729610|gb|CI751413.1|CI751413
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88736188|gb|CI759696.1|CI759696
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|163926719|gb|EG713735.1|EG713735
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88394930|gb|CI607657.1|CI607657
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|218488524|gb|FG963297.1|FG963297
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|88417172|gb|CI576246.1|CI576246
EST:     CTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: CTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGC-TTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
EST: gi|86890984|gb|CI305857.1|CI305857
EST:     GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACG                         GACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC
genomic: GCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 73 (downstream exon)
Score: 151

CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttccc ... tatgctgcagGACTTGAAGTTGGTGCTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTCAGCTGGCTCTGAAGCATCGCCAGAATAAGAGGCAGCAACAGCGGATTAT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttcccatcaaccccatatttagtactttagtggatatgtttgtagttgtagcagaggaaaatttgtaccaattagtcaatttgtatgactttatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacccc